resp_protein_toolkit
Tools for encoding / prepping protein sequences
Useful uncertainty-aware AI / ML models for protein sequence data
Tools for *in silico* directed evolution
RESP pipeline classification example
VanillaRFF layer
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resp_protein_toolkit
Index
Index
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B
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E
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F
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G
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I
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O
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P
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R
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S
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V
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__init__() (resp_protein_toolkit.ByteNetPairedSeqs method)
(resp_protein_toolkit.ByteNetSingleSeq method)
(resp_protein_toolkit.InSilicoDirectedEvolution method)
(resp_protein_toolkit.IntegerProteinEncoder method)
(resp_protein_toolkit.OneHotProteinEncoder method)
(resp_protein_toolkit.SubstitutionMatrixEncoder method)
(resp_protein_toolkit.VanillaRFFLayer method)
B
ByteNetPairedSeqs (class in resp_protein_toolkit)
ByteNetSingleSeq (class in resp_protein_toolkit)
E
encode() (resp_protein_toolkit.IntegerProteinEncoder method)
(resp_protein_toolkit.OneHotProteinEncoder method)
(resp_protein_toolkit.SubstitutionMatrixEncoder method)
F
forward() (resp_protein_toolkit.ByteNetPairedSeqs method)
(resp_protein_toolkit.ByteNetSingleSeq method)
(resp_protein_toolkit.VanillaRFFLayer method)
G
get_acceptance_rate() (resp_protein_toolkit.InSilicoDirectedEvolution method)
get_accepted_seqs() (resp_protein_toolkit.InSilicoDirectedEvolution method)
get_ordinal_score() (resp_protein_toolkit.ByteNetPairedSeqs method)
(resp_protein_toolkit.ByteNetSingleSeq method)
get_scores() (resp_protein_toolkit.InSilicoDirectedEvolution method)
get_uncertainty() (resp_protein_toolkit.InSilicoDirectedEvolution method)
I
InSilicoDirectedEvolution (class in resp_protein_toolkit)
IntegerProteinEncoder (class in resp_protein_toolkit)
O
OneHotProteinEncoder (class in resp_protein_toolkit)
P
polish() (resp_protein_toolkit.InSilicoDirectedEvolution method)
predict() (resp_protein_toolkit.ByteNetPairedSeqs method)
(resp_protein_toolkit.ByteNetSingleSeq method)
R
run_chain() (resp_protein_toolkit.InSilicoDirectedEvolution method)
S
SubstitutionMatrixEncoder (class in resp_protein_toolkit)
V
VanillaRFFLayer (class in resp_protein_toolkit)